PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA06G0140300.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 396aa    MW: 41813.4 Da    PI: 6.0511
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA06G0140300.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.98.6e-14136186255
                        HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        ++ah ++Er+RR+++N+ ++ Lr+l+P     + k+ + a+i   +v+YIk+Lq
  ORGLA06G0140300.1 136 KTAHIAVERNRRKQMNENLAVLRSLMPCF---YVKRGDQASIIGGVVDYIKELQ 186
                        689*************************9...9********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.513134185IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.3E-16136207IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.84E-14136190No hitNo description
Gene3DG3DSA:4.10.280.102.9E-14136197IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.3E-11136186IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.3E-10140191IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS516718.566330396IPR002912ACT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0016597Molecular Functionamino acid binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 396 aa     Download sequence    Send to blast
MGDALCDQLL LVDSDGGEFI PHHADADADD LFTILETWED CANVVAGGAP ATTTTLGSPI  60
AAAACISGVV GGQNHQQLPE PAAAKTVPAT NNKRREEEVA DRDGDGDDDD GSPQKRHKCC  120
SPESSTTDVA AATTPKTAHI AVERNRRKQM NENLAVLRSL MPCFYVKRGD QASIIGGVVD  180
YIKELQQVLH SLEAKKQRKV YTDQVLSPRP PATVAASCCS PRPPPLSPRL PPQLLKSTPP  240
LSPRLAVPIS PRTPPTPGSP YRLLRLPPPP PPASGSNYAS PAMTPTHHET AAPSLDAIAA  300
ELSAYASRQA LGGGLLLPDV KVEFAGANLV LKTVSQRSPG QAVKIIAALE GRSLEILHAK  360
ISTVDGTAVN SFTVKIGIEC ELSAEELVQV IQQTFT
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2874820.0AK287482.1 Oryza sativa Japonica Group cDNA, clone: J043025B18, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015642808.10.0PREDICTED: transcription factor SPEECHLESS
SwissprotQ700C72e-69SPCH_ARATH; Transcription factor SPEECHLESS
TrEMBLI1Q2P00.0I1Q2P0_ORYGL; Uncharacterized protein
STRINGORGLA06G0140300.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP34843577
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G53210.15e-35bHLH family protein